T-COFFEE, Version_11.00.8cbe486 (2014-08-12 22:05:29 - Revision 8cbe486 - Build 477)
Cedric Notredame 
CPU TIME:0 sec.
SCORE=1000
*
 BAD AVG GOOD
*
Kochia_scoparia   : 100
Amaranthus_albu   : 100
Amaranthus_rudi   : 100
Amaranthus_grae   : 100
Amaranthus_palm   : 100
Amaranthus_spin   : 100
Amaranthus_livi   : 100
Amaranthus_hybr   : 100
Amaranthus_thun   : 100
Amaranthus_viri   : 100
Nicotiana_tabac   : 100
Solanum_tuberos   : 100
Lolium_multiflo   : 100
Oryzasativa       : 100
Zea_mays          : 100
Digitaria_sangu   : 100
Ambrosia_trifid   : 100
Conyza_canadens   : 100
Arabidopsis_tha   : 100
Euphorbia_heter   : 100
cons              : 100

Kochia_scoparia   ---------------------------------------------------IHCS-TISTSTP
Amaranthus_albu   --------MSAMALSSSILQCPPHSDISFRFFAHTRTHSPIFFRRPRKLSYIHCS-TSSSSTA
Amaranthus_rudi   --------MSAMALSSSILQCPPHSDISFRFFAHTRTQSPIFFGRPRKLSYIHCS-TSSSSTA
Amaranthus_grae   --------MSAMALSSSILQCPPHSDISFRFFAHTRTHSPIFFRRPRKLSYIHCS-TSSSSTA
Amaranthus_palm   --------MSAMALSSSILQCPPHSDISFRFSAYTPTRSPIFFGRPRKLSYIHCS-TSSSSTA
Amaranthus_spin   --------MSAMALSSSILQCPPHSDFSFRFSAYTPTRSPFFFGRPPKLSYIHCS-TSSSSTA
Amaranthus_livi   ---------------------------------------------------------------
Amaranthus_hybr   ---------------------------------------------------------------
Amaranthus_thun   --------MSAMALSSSILQCPPHSDISFRFSAHSPTHSPIFFGRPRKLSYIHCS-TSSSSTA
Amaranthus_viri   --------MSAMALSSSILQCPPHSDISFRFSAHSPTHSPIFFGRPRKLSYIHCS-TSSSSTA
Nicotiana_tabac   ---------MTTTPIANHPNIFTHQSSSSPLAFLNRTSFIPFSSISKRNSVNCNGWRTRCSVA
Solanum_tuberos   MTTTAVANHPSIFTHRSPLPSPSSSSSSPSFLFLNRTNFIPYFSTSKRNSVNCNGWRTRCSVA
Lolium_multiflo   ---------------------------------------------------------------
Oryzasativa       -----------------------------MATATSATAAPPLRIRDAARRTRRRG-HVRCAVA
Zea_mays          -------------------------MVAATATAMATAASPLLNGTRIPARLRHRGLSVRCAAV
Digitaria_sangu   ---------------------------------------------------------------
Ambrosia_trifid   ------MSSLTNLPSLNHYRTWSSPPIPHRTQSSKPPNHLTTYGPTNNNHNRRTTTTFRCSIA
Conyza_canadens   ----------------------------------DSSSRPLL---------------------
Arabidopsis_tha   --------------------------MELSLLRPTTQSLLPSFSKPNLRLNVYKPLRLRCSVA
Euphorbia_heter   ---------------------------------------------------------------

cons                                                                             


Kochia_scoparia   TSSSNPGTLGEGGLL-----DCVIVGGGISGLCIAQALSTKYSSLSTNFIVTEAKDRVGGNIT
Amaranthus_albu   NYQNTITSQGEGEKVL----DCVIVGAGISGLCIAQALSTKHIQSNLNFIVTEAKHRVGGNIT
Amaranthus_rudi   NYQNTITSQGEGDKVL----DCVIVGAGISGLCIAQALSTKHIQSNLNFIVTEAKHRVGGNIT
Amaranthus_grae   NYQNTITSQGEGEKVL----DCVIVGAGISGLCIAQALSTKHIQSNLNFIVTEAKHRVGGNIT
Amaranthus_palm   NYQNTITTQGEGDKVL----DCVIVGAGISGLCIAQALSTKHIQSNLNFIVTEAKNRVGGNIT
Amaranthus_spin   NYQNTITTQGEGDKVL----DCVIVGAGISGLCIAQALSTKHIQSNLNFIVTEAKNRVGGNIT
Amaranthus_livi   ---------------------CVIVGAGISGLCIAQALSTKHIQSNLNFIVTEAKHRVGGNIT
Amaranthus_hybr   ----------------------------------------------------EAKHRVGGNIT
Amaranthus_thun   NYQNTITTQGEGDKVL----DCVIVGAGISGLCIAQALSTKHIQSNLNFIVTEAKHRVGGNIT
Amaranthus_viri   NYQNTITTQGEGDKVL----DCVIVGAGISGLCIAQALSTKHIQSNLNFIVTEAKHRVGGNIT
Nicotiana_tabac   KDYTVPSSAVDGGPAAEL--DCVIVGAGISGLCIAQVMSANY----PNLMVTEARDRAGGNIT
Solanum_tuberos   KDYTVPPSEVDGNQFPEL--DCVVVGAGISGLCIAKVISANY----PNLMVTEARDRAGGNIT
Lolium_multiflo   ---------------------------------------------------------------
Oryzasativa       SG-AAEAPAAPGARVSA---DCVVVGGGISGLCTAQALATKHG--VGDVLVTEARARPGGNIT
Zea_mays          AGGAAEAPASTGARLSA---DCVVVGGGISGLCTAQALATRHG--VGDVLVTEARARPGGNIT
Digitaria_sangu   ---------------------------------------------------------------
Ambrosia_trifid   NDTPISPPITNDSNSKPL-LDCVIIGAGISGLCIAQALATKHADVSPDVVVTEARDRVGGNIS
Conyza_canadens   --------------------DCVVVGAGISGLCIAQALSTKHG---GDVVVTEARERVGGNIS
Arabidopsis_tha   GGPTVGSSKIEGGGGTTITTDCVIVGGGISGLCIAQALATKHPDAAPNLIVTEAKDRVGGNII
Euphorbia_heter   ---------------------CVIVGGGITGLCIAQALATKHRNVAPNVIVTEARDRVGGNIN

cons                                                                             


Kochia_scoparia   TKED--DGYIWEEGPNSFQPSDAVLTMAVDCGLKDELVFGDPKAPRFVLWNGKLRRVPSKLTD
Amaranthus_albu   TMES--DGYIWEEGPNSFQPSDPVLTMAVDSGLKDDLVLGDPNAPRFVLWNGKLRPVPSKPTD
Amaranthus_rudi   TMES--DGYIWEEGPNSFQPSDPVLTMAVDSGLKDDLVLGDPNAPRFVLWNGKLRPVPSKPTD
Amaranthus_grae   TMES--DGYIWEEGPNSFQPSDPVLTMAVDSGLKDDLVLGDPNAPRFVLWNGKLRPVPSKPTD
Amaranthus_palm   TMES--DGYIWEEGPNSFQPSDPVLTMAVDSGLKDDLVLGDPNAPRFVLWNGKLRPVPSKPTD
Amaranthus_spin   TMES--DGYIWEEGPNSFQPSDPVLTMAVDSGLKDDLVLGDPNAPRFVLWNGKLRPVPSKPTD
Amaranthus_livi   TMES--DGYIWEEGPNSFQPSDPVLTMAVDSGLKDDLVLGDPDAPRFVLWNGKLRPVPSKPTD
Amaranthus_hybr   TMES--DGYIWEEGPNSFQPSDPVLTMAVDSGLKDDLVLGDPNAPRFVLWNGKLRPVPSKPTD
Amaranthus_thun   TMES--DGYIWEEGPNSFQPSDPVLTMAVDSGLKDDLVLGDPNAPRFVLWNGKLRPVPSKPTD
Amaranthus_viri   TMES--DGYIWEEGPNSFQPSDPVLTMAVDSGLKDDLVLGDPNAPRFVLWNGKLRPVPSKPTD
Nicotiana_tabac   TVER--DGYLWEEGPNSFQPSDPMLTMAVDCGLKDDLVLGDPNAPRFVLWKGKLRPVPSKLTD
Solanum_tuberos   TVER--DGYLWEEGPNSFQPSDPMLTMAVDCGLKDDLVLGDPDAPRFVLWKDKLRPVPGKLTD
Lolium_multiflo   ---------------------------------------------------------------
Oryzasativa       TAERAGEGYLWEEGPNSFQPSDPVLTMAVDSGLKDDLVFGDPNAPRFVLWEGKLRPVPSKPGD
Zea_mays          TVERPEEGYLWEEGPNSFQPSDPVLTMAVDSGLKDDLVFGDPNAPRFVLWEGKLRPVPSKPAD
Digitaria_sangu   ---------------------------------------------------------------
Ambrosia_trifid   TVER--DGYLWEEGPNSFQPSDPMLTMVVDSGLKDDLVLGDPTAPRFVLWGGGLKPVPSSPAD
Conyza_canadens   TVER--DGYLWEEGPNSFQPSDPMLTMVVDSGLKDDLVLGDPTAPRFVLWDGDLKPVPSSPSD
Arabidopsis_tha   TREE--NGFLWEEGPNSFQPSDPMLTMVVDSGLKDDLVLGDPTAPRFVLWNGKLRPVPSKLTD
Euphorbia_heter   TVER--DGYLWEEGPNSFQPSDPMLTMAVDSGLKDDLVLGDPTAPRFVLWDGQLRPVPSKPSD

cons                                                                             


Kochia_scoparia   LPFFDLMSFPGKIRAGLGALGFR--PSPPGREESVEDFVRRNLGDEVFERLIEPFCSGVYAGD
Amaranthus_albu   LPFFDLMSFPGKIRAGLGALGLRPPPPPSSYEESVEEFVRRNLGDEVFERLIEPFCSGVYAGD
Amaranthus_rudi   LPFFDLMSFPGKIRAGLGALGLRPPPPPPSYEESVEEFVRRNLGDEVFERLIEPFCSGVYAGD
Amaranthus_grae   LPFFDLMSFPGKIRAGLGALGLRPPPPPSSYEESVEEFVRRNLGDEVFERLIEPFCSGVYAGD
Amaranthus_palm   LPFFDLMSFPGKIRAGLGALGLRPSPPPPSYEESVEEFVRRNLGDEVFERLIEPFCSGVYAGD
Amaranthus_spin   LPFFDLMSFPGKIRAGLGALGLR--PPPPSYEESVEEFVRRNLGDEVFERLIEPFCSGVYAGD
Amaranthus_livi   LPFFDLMSFPGKIRAGLGALGLRPPPPPPSYEESVEEFVRRNLGDEVFERLIEPFCSGVYAGD
Amaranthus_hybr   LPFFDLMSFPGKIRAGLGALGLRRPPPPSSYEESVEEFVRRNLGDEVFERLIEPFCSGVYAGD
Amaranthus_thun   LPFFDLMSFPGKIRAGLGALGLRRPPPPSSYEESVEEFVRRNLGDEVFERLIEPFCSGVYAGD
Amaranthus_viri   LPFFDLMSFPGKIRAGLGALGLRRPPPPSSYEESVEEFVRRNLGDEVFERLIEPFCSGVYAGD
Nicotiana_tabac   LAFFDLMSIPGKLRAGFGAIGLR--PSPPGHEESVEQFVRRNLGGEVFERLIEPFCSGVYAGD
Solanum_tuberos   LPFFDLMSIPGKLRAGFGAIGLR--PSPPGYEESVEQFVRRNLGAEVFERLIEPFCSGVYAGD
Lolium_multiflo   ------------------------------------------------ERLI-AFCSGVYAGD
Oryzasativa       LPFFDLMSIPGKLRAGLGALGVR--APPPGREESVEDFVRRNLGAEVFERLIEPFCSGVYAGD
Zea_mays          LPFFDLMSIPGKLRAGLGALGIR--PPPPGREESVEEFVRRNLGAEVFERLIEPFCSGVYAGD
Digitaria_sangu   ---------------------------------------------------------------
Ambrosia_trifid   LPFFDLMSFTGKLRAGFGALGIR--PPPPDREESVEEFVRRNLGDEVFERLIEPFCSGVYAGD
Conyza_canadens   LPTFDLMSLGGKLRAGFGALGIR--PPPPDREESVEEFVRRNLGDEVFERLIEPFCSGVYAGD
Arabidopsis_tha   LPFFDLMSIGGKIRAGFGALGIR--PSPPGREESVEEFVRRNLGDEVFERLIEPFCSGVYAGD
Euphorbia_heter   LPFFDLMSIGGKLRAGFGALGLR--PPPPGREESVEEFVRRNLGDEVFERLIEPFCSGVYAGD

cons                                                                             


Kochia_scoparia   PAKLSMKAAFGRVWVLEQMGGNIIGGALKTIQEKKNKPKPPRDPRLPKPKGQTVGSFRKGLIM
Amaranthus_albu   PAKLSMKAAFGKVWTLEQKGGSIIAGTLKTIQERKNNPPPPRDPRLPKPKGQTVGSFRKGLIM
Amaranthus_rudi   PAKLSMKAAFGKVWTLEQKGGSIIAGTLKTIQERKNNPLPPRDPRLPKPKGQTVGSFRKGLIM
Amaranthus_grae   PAKLSMKAAFGKVWTLEQKGGSIIAGTLKTIQERKNNPPPPRDPRLPKPKGQTVGSFRKGLIM
Amaranthus_palm   PSKLSMKAAFGKVWTLEQKGGSIIAGTLKTIQERKNNPPPPRDPRLPKPKGQTVGSFRKGLIM
Amaranthus_spin   PSKLSMKAAFGKVWTLEQKGGSIIAGTLKTIQERKNNPPPPRDPRLPKPKGQTVGSFRKGLIM
Amaranthus_livi   PTKLSMKAAFGKVWTLEQKGGSIIAGTLKSIQERKNNPPPPRDPRLPKPKGQTVGSFRKGLIM
Amaranthus_hybr   PTKLSMKAAFGKVWTLEQKGGSIIAGTLKTIQERKNNPPPPRDPRLPKPKGQTVGSFRKGLIM
Amaranthus_thun   PTKLSMKAAFGKVWTLEQKGGSIIAGTLKTIQERKNNPPPPRDPRLPKPKGQTVGSFRKGLIM
Amaranthus_viri   PTKLSMKAAFGKVWTLEQKGGSIIAGTLKTIQERKNNPPPPRDPRLPKPKGQTVGSFRKGLIM
Nicotiana_tabac   PSKLSMKAAFGKVWKLEETGGSIIGGTFKAIKERSSTPKAPRDPRLPKPKGQTVGSFRKGLRM
Solanum_tuberos   PSKLIMKAAFGKVWKLEQTGGSIIGGTFKAIKERSSNPKPPRDPRLPTPKGQTVGSFRKGLRM
Lolium_multiflo   PSKLSMRAAFGKVWRLEENGGSIIGGTIKAIQDRGKNPKPPRDPRLPTPKGQTVASFRKGLAM
Oryzasativa       PSKLSMKAAFGKVWRLEDTGGSIIGGTIKTIQERGKNPKPPRDPRLPTPKGQTVASFRKGLTM
Zea_mays          PSKLSMKAAFGKVWRLEETGGSIIGGTIKTIQERSKNPKPPRDARLPKPKGQTVASFRKGLAM
Digitaria_sangu   ---------------------------------------------------------------
Ambrosia_trifid   PSKLSMKAAFGKVWKLEKNGGSIIGGAFKAIQAKNKSTKPPRDPRLPTPKGQTVGSFRKGQAM
Conyza_canadens   PSKLSMKAAFGKVWKLEQNGGSIVGGAFKAIQAKNKSTKPPRDPRLPTPKGQTVGSFRKGQAM
Arabidopsis_tha   PSKLSMKAAFGKVWKLEQNGGSIIGGTFKAIQERKNAPKAERDPRLPKPQGQTVGSFRKGLRM
Euphorbia_heter   PAKLSMKAAFGKVWMLEQNGGSIIGGTFKAIQERNKNPKPPRDPRLPKPKGQTVGSFRKGLTM

cons                                                                             


Kochia_scoparia   LPNAISARLGSKVKLSWTLASISKTHNGEYNLIYDTPDGPVSVRTKSIVMTIPSYVASSLLRP
Amaranthus_albu   LPTAIAARLGSKVKLSWTLSNIDKSLNGEYNLTYQTPDGPVSVRTKAVVMTVPSYIASSLLRP
Amaranthus_rudi   LPTAIAARLGSKVKLSWTLSNIDKSLNGEYNLTYQTPDGPVSVRTKAVVMTVPSYIASSLLRP
Amaranthus_grae   LPTAIAARLGSKVKLSWTLSNIDKSLNGEYNLTYQTPDGPVSVRTKAVVMTVPSYIASSLLRP
Amaranthus_palm   LPTAIAARLGSKVKLSWTLSNIDKSLNGEYNLTYQTPDGPVSVRTKAVVMTVPSYIASSLLRP
Amaranthus_spin   LPTAIAARLGSKVKLSWTLSNIDKSLNGEYNLTYQTPDGPVSVRTKAVVMTVPSYIASSLLRP
Amaranthus_livi   LPTAIAARLGSKVKLSWTLSNIDKSLNGEYNLTYQTPDGPVSVRTKAVVMTVPSYIASSLLRP
Amaranthus_hybr   LPTAIAARLGSKVKLSWTLSNIDKSLNGEYILTYQTPDGPVSVRTKAVVMTVPSYIASSLLRP
Amaranthus_thun   LPTAIAARLGSKVKLSWTLSNIDKSLNGEYILTYQTPDGPVSVRTKAVVMTVPSYIASSLLRP
Amaranthus_viri   LPTAIAARLGSKVKLSWTLSNIDKSLNGEYNLTYQTPDGPVSVRTKAVVMTVPSYIASSLLRP
Nicotiana_tabac   LPDAISARLGSKLKLSWKLSSITKSEKGGYHLTYETPEGVVSLQSRSIVMTVPSYVASNILRP
Solanum_tuberos   LPDAICERLGSKVKLSWKLSSITKSEKGGYLLTYETPEGVVSLRSRSIVMTVPSYVASNILRP
Lolium_multiflo   LPNAIASRLGSKVKLSWKLTGITKSDNQGYVLAYETPEGVVSVQAKSVIMTIPSYIASEILRP
Oryzasativa       LPDAITSRLGSKVKLSWKLTSITKSDNKGYALVYETPEGVVSVQAKTVVMTIPSYVASDILRP
Zea_mays          LPNAITSSLGSKVKLSWKLTSITKSDDKGYVLEYETPEGVVSVQAKSVIMTIPSYVASNILRP
Digitaria_sangu   ----------------------------------------------------------DILRP
Ambrosia_trifid   LPNAISKRLGSRVKVSWKLINISKLENRGYNLTYETPNGFASLQTKTVVMTVPSYVASDLLRP
Conyza_canadens   LPNAISKGLGSRVKLSWELVGITKSENRGYSLTYRTPDGLESLQTKTVVMTVPSYVASDLLRP
Arabidopsis_tha   LPEAISARLGSKVKLSWKLSGITKLESGGYNLTYETPDGLVSVQSKSVVMTVPSHVASGLLRP
Euphorbia_heter   LPEAIASSLGSNIKLSWKLLGISKLDNREYSLTYETPEGSVTVQSKSVVLTIPSHIASNILNP

cons                                                                         :*.*


Kochia_scoparia   FSDAAADSLSKFHYPPVAAVSLSYPEEAIRPECLIDGKLQGFGQLHPRSQGVETLGSIYSSSL
Amaranthus_albu   LSDVAADSL------------------------------------------------------
Amaranthus_rudi   LSDVAADSLSKFYYPPVAAVSLSYPKEAIRPECLIDGELKGFGQLHPRSQGVETLGTIYSSSL
Amaranthus_grae   LSDVAADSLSKFYYPPVAAVSLSYPKEAIRPECLIDGELKGFGQLHPRSQGVETLGTIYSSSL
Amaranthus_palm   LSDVAADSLSKFYYPPVAAVSLSYPKEAIRPECLIDGELKGFGQLHPXSQGVETLGTIYSSSL
Amaranthus_spin   LSDVAADSLSKFYYPPVAAVSLSYPKEAIRPECLIDGELKGFGQLHPRSQGVETLGTIYSSSL
Amaranthus_livi   LSDVAADSLSKFYYPPVAAVSLSYPKEAIRPECLIDGELKGFGQLHPRSQGVETLGTIYSSSL
Amaranthus_hybr   LSDVAADSLSKFYYPPVAAVSLSYPKEAIRPECLIDGELKGFGQLHPRSQGVETLGTIYSSSL
Amaranthus_thun   LSDVAADSLSKFYYPPVAAVSLSYPKEAIRPECLIDGELKGFGQLHPRSQGVETLGTIYSSSL
Amaranthus_viri   LSDVAADSLSKFYYPPVAAVSLSYPKEAIRPECLIDGELKGFGQLHPRSQGVETLGTIYSSSL
Nicotiana_tabac   LSVAAADALSNFYYPPVGAVTISYPQEAIRDERLVDGELKGFGQLHPRTQGVETLGTIYSSSL
Solanum_tuberos   LSVAAADALSSFYYPPVAAVTISYPQEAIRDERLVDGELKGFGQLHPRSQGVETLGTIYSSSL
Lolium_multiflo   LSSDAADGLSKFYYPPVAAVTVSYPTEAIRXECLIDGELQGFGQLHPRSQGVETLGTIYSSSL
Oryzasativa       LSSDAADALSIFYYPPVAAVTVSYPKEAIRKECLIDGELQGFGQLHPRSQGVETLGTIYSSSL
Zea_mays          LSSDAADALSRFYYPPVAAVTVSYPKEAIRKECLIDGELQGFGQLHPRSQGVETLGTIYSSSL
Digitaria_sangu   LSSDAADALSRFYYPPVGAVTISYPKEAIRKECLIDGELQGFGQLHPRSQGVETLGTIYSSSL
Ambrosia_trifid   LSSEAAEALSKFYYPPVAAVSVSYPKEAIRADRLIDGQLKGFGQLHPRSQGVETLGTIYSSSL
Conyza_canadens   LSVEAADALSKFYYPPVAAVSVSYPKEAIRADRLIDGQLKGFGQLHPRSQGVETLGTIYSSSL
Arabidopsis_tha   LSESAANALSKLYYPPVAAVSISYPKEAIRTECLIDGELKGFGQLHPRTQGVETLGTIYSSSL
Euphorbia_heter   LSTTAAEALSKFYYPPVAAVSISYPKDAIRTERLIDGELKGFGQLHPRSQGVETLGTIYSSSL

cons              :*  **:.*                                                      


Kochia_scoparia   FPGRAPPGRTMILSFIGGATNPGIVDKTQDELAKTVDKDLRRILINPSAKDPRVLGVKVWPQA
Amaranthus_albu   ---------------------------------------------------------------
Amaranthus_rudi   FPGRAPPGRTLILSYIGGATNLGILQKSEDELAETVDKDLRKILINPNAKGSRVLGVRVWPKA
Amaranthus_grae   FPGRAPPGRTLILSYIGGATNLGILQKSEDELAETVDKDLRKILINPNAKGSRVLGVRVWPKA
Amaranthus_palm   FPGRAPPGRTLILSYIGGATNVGILQKSEDELAETVDKDLRKILINPNAKGSRVLGVRVWPKA
Amaranthus_spin   FPGRAPPGRTLILSYIGGATNVGILQKSEDELAETVDKDLRKILINPNAKGSRVLGVRVWPKA
Amaranthus_livi   FPGRAPPGRTLILSYIGGATNVGILQKSEDELAETVDKDLRKILINPNAKGSRVLGVRVWPKA
Amaranthus_hybr   FPGRAPPGRTLILSYIGGATNVGILQKSEDELADTVDKDLRKILINPNAKGSRVLGVRVWPKA
Amaranthus_thun   FPGRAPPGRTLILSYIGGATNVGILQKSEDELAETVDKDLRKILINPNAKGSRVLGVRVWPKA
Amaranthus_viri   FPGRAPPGRTLILSYIGGATNVGILQKSEDELAETVDKDLRKILINPNAKGSRVLGVRVWPKA
Nicotiana_tabac   FPNRAPKGRVLLLNYIGGAKNPEILSKTESQLVEVVDRDLRKMLIKPKAQDPLVVGVRVWPQA
Solanum_tuberos   FPNRAPNGRVLLLNYIGGATNTEIVSKTESQLVEAVDRDLRKMLIKPKAQDPFVTGVRVWPQA
Lolium_multiflo   FPNRAPAGRVLLLNYIGGATNTGIVSKTESDLVEAVDRDLRKMLINPTAPDPLALGVRVWPQA
Oryzasativa       FPNRAPAGRVLLLNYIGGSTNTGIVSKTESELVEAVDRDLRKMLINPKAVDPLVLGVRVWPQA
Zea_mays          FPNRAPDGRVLLLNYIGGATNTGIVSKTESELVEAVDRDLRKMLINSTAVDPLVLGVRVWPQA
Digitaria_sangu   FPNRAPAGRVLLLNYIGGATNTGIVSKSESELVEAVDRDLRKMLINPRAVDPLVLGVRVWPQA
Ambrosia_trifid   FPNRAPPGRVLLLNYIGGATNPGILSKTESELVEAVDRDLRKMLINPRAGEPLTLGVKVWPRA
Conyza_canadens   FPNRAPPGRVLLLNYIGGATNPGILSKTESQIVEAVDRDLRKMLINPKAGEPLTLGVKVWPRA
Arabidopsis_tha   FPNRAPPGRILLLNYIGGSTNTGILSKSEGELVEA----------------------------
Euphorbia_heter   FPNRAPDGRILLLNYIGGATNPGILAKKDSELVEAVDRDLRKMLINPNAKDPLTLGVRVWPQA

cons                                                                             


Kochia_scoparia   IPQFLIGHFDLLDAAKAALTDAGCKGLFLGGNYVSGVALGRCIEGAYESAAEVVDFLSQYSDK
Amaranthus_albu   --------LNLLSSSRSS---------------------------------------------
Amaranthus_rudi   IPQFLVGHFDVLDAAKAGLANAGLKGLFLGGNYVSGVALGRCIEGAYDSASEVVDFLSQYKDK
Amaranthus_grae   IPQFLVGHFDLLDAAKAALANAGLKGLFLGGNYVSGVALGRCIEGAYDSASQVVDFLSQYKDK
Amaranthus_palm   IPQFLVGHFDLLDAAKAGLANAGLKGLFLGGNYVSGVALGRCIEGAYDSASQVVDFLSQYKDK
Amaranthus_spin   IPQFLVGHFDLLDAAKAGLANAGLKGLFLGGNYV-----------------------------
Amaranthus_livi   IPQFLVGHFDLLDAAKAGLANAGLKGLFLGGNYVSGVALGRCIEGAYDSASQVVDFLSQYKDK
Amaranthus_hybr   IP-------------------------------------------------------------
Amaranthus_thun   ---------------------------------------------------------------
Amaranthus_viri   IPQFLVGHFDLLDAAKAGLANAGLKGLFLGGNYVSGVALGRCIEGAYDSASQVVDFLSQYKDK
Nicotiana_tabac   IPQFLVGHLDTLSTAKAAMNDNGLEGLFLGGNYVSGVALGRCVEGAYEVASEVTGFLSRYAYK
Solanum_tuberos   IPQFLVGHLDTLGTAKTALSDNGLDGLFLGGNYVSGVALGRCVEGAYEIASEVTGFLSQYAYK
Lolium_multiflo   IPQFLIGHLDRLDAAKSALARGGCSGLFLGGNYVAGVALGRCIEGAYESASEVSDFLTKYAYK
Oryzasativa       IPQFLIGHLDHLEAAKSALGKGGYDGLFLGGNYVAGVALGRCVEGAYESASQISDYLTKYAYK
Zea_mays          IPQFLVGHLDLLEAAKAALDRGGYDGLFLGGNYVAGVALGRCVEGAYESASQISDFLTKYAYK
Digitaria_sangu   IPQFLVGHLDLLEVAKSALGRGGYDGLFLGGNYVAGVALGRCVEGAYESASQISDFLTKYAYK
Ambrosia_trifid   IPQFLIGHFDILDAAKFALSEGGYRGMFLGGNYVSGVALGRCVESAYDVAADVSTFLSRGVYK
Conyza_canadens   IPQFLIGHYDILEAAKCALSLAGYRGMFLGGNYVSGVALGRCVENAYEVAADVSNFLSRGVYK
Arabidopsis_tha   ---FLVGHFDILDTAKSSLTSSGYEGLFLGGNYVAGVALGRCVEGAYETAIEVNNFMSRYAYK
Euphorbia_heter   IPQFLIGHYDILDTAKNALSEQGLEGLFLGGNYVYGVALGKCVEGAYETASSVTNFLTQYTYK

cons